ATMEGA32U4 has major differences in TIMER4 registers compared to ATMEGA1280 and 2560. turnOffPWM, analogWrite, and initialize routines had wrong registers, bit names, etc.
Also, removing the inline version of digitalPinToTimer() (since we're not optimizing the functions that use it anyway). The noAnalogWrite() function is in wiring_analog.c, deriving from the previous turnOffPWM() which has moved from wiring_digital.c.
http://code.google.com/p/arduino/issues/detail?id=476
Factoring out the implementation of digitalWrite(), digitalRead(), and pinMode() into macros that can either be inlined (for constant pin numbers) or executed within a function (non-constant pins). Removing testing for timers on pins in digitalWrite(), digitalRead(), and pinMode(). Moving pin to port macros from pins_arduino.h to wiring.h.
- moving back to multple cores per platform
- using target instead of platform
- moving per-board and per-programmer preferences out of Preferences.java and into a new Target class
- adding a new "target" preference
- support for platform:value values in board preferences for bootloader path and core
- XXX: need to support platform:value syntax for board upload.using preferences.